Publications

Environment-Organism Feedbacks Drive Changes in Ecological Interactions
Meacock, O. J., Mitri, S. (2025).
https://doi.org/10.1111/ele.70027
A framework for understanding collective microbiome metabolism
Huelsmann, M., Schubert, O. T., Ackermann, M. (2024).
https://doi.org/10.1038/s41564-024-01850-3
Inferring bacterial interspecific interactions from microcolony growth expansion
Miguel Trabajo, T., Guex, I., Dubey, M., Sarton-Lohéac, E., Todorov, H., Richard, X., Mazza, C., van der Meer, J. R. (2024).
https://doi.org/10.1093/femsml/uqae020
Artificial selection improves pollutant degradation by bacterial communities
Arias-Sánchez, F. I., Vessmann, B., Haym, A., Alberti, G., Mitri, S. (2024).
https://doi.org/10.1038/s41467-024-52190-z
Fragmented micro-growth habitats present opportunities for alternative competitive outcomes
Batsch, M., Guex, I., Todorov, H., Heiman, C. M., Vacheron, J., Vorholt, J., Keel, C., van der Meer, J. R. (2024).
https://doi.org/10.1038/s41467-024-51944-z
Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions
Causevic, S., Dubey, M., Morales, M., Salazar, G., Sentchilo, V., Carraro, N., Ruscheweyh, H.-J., Sunagawa, S., van der Meer, J. R. (2024).
https://doi.org/10.1038/s41467-024-46933-1
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere
Garrido-Sanz, D., Causevic, S., Vacheron, J., Heiman, C. M., Sentchilo, V., van der Meer J. R., Keel, C. (2023).
https://doi.org/10.1186/s40168-023-01660-5
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2
Morales, M., Sentchilo, V., Carraro, N., Causevic, S., Vuarambon, D., van der Meer, J. R. (2023).
https://doi.org/10.1128/msystems.01174-22
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