Publications

Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions
Causevic, S., Dubey, M., Morales, M., Salazar, G., Sentchilo, V., Carraro, N., Ruscheweyh, H.-J., Sunagawa, S., van der Meer, J. R. (2024).
https://doi.org/10.1038/s41467-024-46933-1
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere
Garrido-Sanz, D., Causevic, S., Vacheron, J., Heiman, C. M., Sentchilo, V., van der Meer J. R., Keel, C. (2023).
https://doi.org/10.1186/s40168-023-01660-5
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2
Morales, M., Sentchilo, V., Carraro, N., Causevic, S., Vuarambon, D., van der Meer, J. R. (2023).
https://doi.org/10.1128/msystems.01174-22
Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation
Causevic, S., Tackmann, J., Sentchilo, V., von Mering, C., van der Meer, J. R. (2022).
https://doi.org/10.1128/msystems.00160-22
Meta-omics-aided isolation of an elusive anaerobic arsenic-methylating soil bacterium
Viacava, K., Qiao, J., Janowczyk, A., Poudel, S., Jacquemin, N., Lederballe Meibom, K., Shreshta, H. K., Reid, M. C., Hettich, R. L., Bernier-Latmani, R. (2022).
https://doi.org/10.1038/s41396-022-01220-z
Recent advances in microbial community analysis from machine learning of multiparametric flow cytometry data
Özel Duygan, B. D., van der Meer, J. R. (2022).
https://doi.org/10.1016/j.copbio.2022.102688
Environmental connectivity controls diversity in soil microbial communities
Dubey, M., Hadadi, N., Pelet, S., Carraro, N., Johnson, D. R., van der Meer, J. R. (2021).
doi: 10.1038/s42003-021-02023-2
Variability in arsenic methylation efficiency across aerobic and anaerobic microorganisms
Viacava, K., Lederballe Meibom, K., Ortega, D., Dyer, S., Gelb, A., Falquet, L., Minton, N.P., Mestrot, A., Bernier-Latmani (2020).
doi: 10.1021/acs.est.0c03908
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