Publicly available NCCR databases and computing tools:
| Name | Link | Description |
| MicrobeAtlas | https://microbeatlas.org/ | Global-scale database for the 16S ribosomal RNA gene |
| mOTUs | https://motu-tool.org/ | Taxonomic profiling tool for metagenomic and metatranscriptomic samples |
| zDB | https://github.com/metagenlab/zDB | Comparative genomics database for the analysis of clinically relevant strains |
| mBARq | https://github.com/MicrobiologyETHZ/mbarq | Quantitative analysis of barcoded sequencing data |
| NICEgame | https://github.com/EPFL-LCSB/NICEgame | Characterize missing metabolic capabilities in genome-scale metabolic models |
| ATLASx | http://lcsb-databases.epfl.ch/pathways/Atlas2 | Predictions of biochemical reactions and pathways for synthetic biologists and metabolic engineers |
| CROMICS | https://github.com/EPFL-LCSB/cromics | Agent-based framework with biophysical details |