Publications Archive

Publications

Root and microbial contributions to anoxic microsite formation in the rhizosphere: a microfluidic approach

Lacroix, E.M., Ceriotti, G., Garrido-Sanz, D., Borisov, S.M., Berg, J.S., Keel, C., de Anna, P., Keiluweit, M. (2026).

https://doi.org/10.1111/nph.71109

Priority effects drive strain-level community composition of honeybee gut microbiota

Prasad, A., Santos-Matos, G., Szigeti-Genoud, A., Mazel, F., Engel, P. (2026).

https://doi.org/10.1093/ismejo/wrag056

The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems

Matias Rodrigues, J.F., Tackmann, J., Malfertheiner, L., Patsch, D., Perez-Molphe-Montoya, E., Näpflin, N., Gaio, D., Rot, G., Danaila, M., Peluso, M.E., Dmitrijeva, M., Schmidt, T.S.B., von Mering, C. (2026).

https://doi.org/10.1016/j.cell.2026.01.021

Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity

Wiederkehr, F., Paoli, L., Richter, D., et al. (2026).

https://doi.org/10.1038/s41586-026-10159-6

In silico analysis and comparison of the metabolic capabilities of different organisms by reducing metabolic complexity

Vayena, E., Ataman, M., Hatzimanikatis, V. (2026).

https://doi.org/10.1186/s40168-025-02299-0

Cluster dispersal shapes microbial diversity during community assembly

Marrec, L., Lehtinen, S. (2026).

https://doi.org/10.1371/journal.pcbi.1013918

Fecal Microbiota Transplantation Donor Screening: Is Dientamoeba fragilis a Valid Criterion for Donor Exclusion? A Longitudinal Study of a Swiss Cohort

Moser, K., Ballif, A., Pillonel, T., Concu, M., Montenegro-Borbolla, E., Nickel, B., Stampfli, C., Ruf, M.-T., Audry, M., Kapel, N., Gerber, S., Jacot, D., Bertelli, C., Galpérine, T. (2026).

https://doi.org/10.3390/microorganisms14010217

Community conservatism is widespread across microbial phyla and environments

Malfertheiner, L., Tackmann, J., Matias Rodrigues, J.F., von Mering, C. (2026).

https://doi.org/10.1038/s41559-025-02957-4

Novel artificial selection method improves function of simulated microbial communities

Vessman, B., Guridi-Fernández, P., Arias-Sánchez, F.I., Mitri, S. (2026).

https://doi.org/10.1371/journal.pcbi.1013863