Publications

Host-derived organic acids enable gut colonization of the honey bee symbiont Snodgrassella alvi
Quinn, A., El Chazli, Y., Escrig, S., Daraspe, J., Neuschwander, N., McNally, A., Genoud, C., Meibom, A., Engel, P. (2024).
https://doi.org/10.1038/s41564-023-01572-y
Leaf microbiome dysbiosis triggered by T2SS-dependent enzyme secretion from opportunistic Xanthomonas pathogens
Pfeilmeier, S., Werz, A., Ote, M., Vorholt, J. A., et al. (2024).
https://doi.org/10.1038/s41564-023-01555-z
Turnover of strain-level diversity modulates functional traits in the honeybee gut microbiome between nurses and foragers
Baud, G. L. C., Prasad, A., Ellegaard, K. M., Engel, P. (2023).
https://doi.org/10.1186/s13059-023-03131-4
Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning
Emmenegger, B., Massoni, J., Pestalozzi, C. M., Bortfeld-Miller, M., Maier, B. A., Vorholt, J. A. (2023).
https://doi.org/10.1038/s41467-023-43793-z
Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits
Yersin, S., Garneau, J. R., Schneeberger, P. H. H., Osman, K. A., Cercamondi, C. I., Muhummed, A. M., Tschopp, R., Zinsstag, J., Vonaesch, P. (2023).
https://doi.org/10.1038/s41598-023-47748-8
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
Evolutionary and ecological role of extracellular contractile injection systems: from threat to weapon
Heiman, C. M., Vacheron, J., Keel, C. (2023).
https://doi.org/10.3389/fmicb.2023.1264877
Molecular and evolutionary basis of O-antigenic polysaccharide-driven phage sensitivity in environmental pseudomonads
Vacheron, J., Heiman, C. M., Garneau, J. R., Kupferschmied, P., de Jonge, R., Garrido-Sanz, D., Keel, C. (2023).
https://doi.org/10.1128/spectrum.02049-23
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere
Garrido-Sanz, D., Causevic, S., Vacheron, J., Heiman, C. M., Sentchilo, V., van der Meer J. R., Keel, C. (2023).
https://doi.org/10.1186/s40168-023-01660-5
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