Publications

Habitat filtering more than microbiota origin controls microbiome transplant outcomes in soil
Causevic, S., Tackmann, J., Sentchilo, V., Malfertheiner, L., Von Mering, C., van der Meer, J. R. (2025).
https://doi.org/10.1093/ismejo/wraf162
Standard ingredient of Drosophila medium reduces transmission and virulence of the gut pathogen Pseudomonas entomophila
Henry, Y., Canal-Domènech, B., González, J., La Mendola, C., Kawecki, T.J. (2025).
https://doi.org/10.1128/spectrum.03065-24
Mechanisms conferring multi-layered protection against intestinal Salmonella Typhimurium infection
Kroon, S., Hardt, W.-D. (2025).
https://doi.org/10.1093/femsre/fuaf038
Blood metabolomics improves prediction of central nervous system damage in multiple sclerosis
Rebeaud, J., Phillips, N.E., Thévoz, G., Vigne, S., Nassirnia, S., Gauthier-Jaques, A., Lim-Dubois-Ferriere, P., Panda, S., Théaudin, M., Du Pasquier, R., Greub, G., Bertelli, C., Kuhle, J., Collet, T.-H. (2025).
https://doi.org/10.1007/s11306-025-02315-2
Quantifying the varying harvest of fermentation products from the human gut microbiota
Arnoldini, M., Sharma, R., Moresi, C., Chure, G., Chabbey, J., Slack, E., Cremer, J. (2025).
https://doi.org/10.1016/j.cell.2025.07.005
High-throughput cultivation and isolation of environmental anaerobes using selectively permeable hydrogel capsules
Sallet, H., Calvo, M., Titus, M., Jacquemin, N., Lederballe Meibom, K., Bernier-Latmani, R. (2025).
https://doi.org/10.1093/ismeco/ycaf117
Microbial and antimicrobial resistance diagnostics by gas sensors and machine learning
Berk, M.B., Shin, H., Jutzeler, C.R., Kessler, T.M., Slack, E., Egli, A., Güntner, A.T. (2025).
https://doi.org/10.1016/j.celbio.2025.100125
Strain-specific galactose utilization by commensal E. coli mitigates Salmonella establishment in the gut
Schubert, C., Näf, J., Petukhov, L., Laganenka, L., Cherrak, Y., Hardt, W.-D. (2025).
https://doi.org/10.1371/journal.ppat.1013232
Designing pathways for bioproducing complex chemicals by combining tools for pathway extraction and ranking
Sveshnikova, A., Oftadeh, O. & Hatzimanikatis, V. (2025).
https://doi.org/10.1038/s41467-025-59827-7
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