Publications

In silico typing maps the natural diversity of Escherichia coli transporter-dependent capsules

Miravet-Verde, S., Cacace, E., Mores, C.R. et al. (2026).

https://doi.org/10.1038/s41564-026-02323-5

Emergent spatial structure in the gut microbiota is driven by bacterial growth and gut contractions

Greter G., Hummel S., Künzli D., Dünki N., Ruoho N., Burkhardt P., et al. (2026).

https://doi.org/10.1371/journal.pbio.3003772

The ecology of bacterial attachment to phytoplankton

Forget, M., Müller, O. & Stocker, R. (2026).

https://www.nature.com/articles/s41564-026-02287-6

Strain-level translocation and enrichment dynamics of oral bacteria in the lower gastrointestinal tract of stunted children

Yersin, S., Gody, J. C., Mazel, F., Djimbele, E., Nigateloum, S. N., et al. (2026).

https://doi.org/10.1080/19490976.2026.2653550

Root and microbial contributions to anoxic microsite formation in the rhizosphere: a microfluidic approach

Lacroix, E.M., Ceriotti, G., Garrido-Sanz, D., Borisov, S.M., Berg, J.S., Keel, C., de Anna, P., Keiluweit, M. (2026).

https://doi.org/10.1111/nph.71109

Priority effects drive strain-level community composition of honeybee gut microbiota

Prasad, A., Santos-Matos, G., Szigeti-Genoud, A., Mazel, F., Engel, P. (2026).

https://doi.org/10.1093/ismejo/wrag056

The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems

Matias Rodrigues, J.F., Tackmann, J., Malfertheiner, L., Patsch, D., Perez-Molphe-Montoya, E., Näpflin, N., Gaio, D., Rot, G., Danaila, M., Peluso, M.E., Dmitrijeva, M., Schmidt, T.S.B., von Mering, C. (2026).

https://doi.org/10.1016/j.cell.2026.01.021

Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity

Wiederkehr, F., Paoli, L., Richter, D., et al. (2026).

https://doi.org/10.1038/s41586-026-10159-6

In silico analysis and comparison of the metabolic capabilities of different organisms by reducing metabolic complexity

Vayena, E., Ataman, M., Hatzimanikatis, V. (2026).

https://doi.org/10.1186/s40168-025-02299-0

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