Publications Archive

Publications

Strain-level translocation and enrichment dynamics of oral bacteria in the lower gastrointestinal tract of stunted children

Yersin, S., Gody, J. C., Mazel, F., Djimbele, E., Nigateloum, S. N., et al. (2026).

https://doi.org/10.1080/19490976.2026.2653550

Root and microbial contributions to anoxic microsite formation in the rhizosphere: a microfluidic approach

Lacroix, E.M., Ceriotti, G., Garrido-Sanz, D., Borisov, S.M., Berg, J.S., Keel, C., de Anna, P., Keiluweit, M. (2026).

https://doi.org/10.1111/nph.71109

Priority effects drive strain-level community composition of honeybee gut microbiota

Prasad, A., Santos-Matos, G., Szigeti-Genoud, A., Mazel, F., Engel, P. (2026).

https://doi.org/10.1093/ismejo/wrag056

The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems

Matias Rodrigues, J.F., Tackmann, J., Malfertheiner, L., Patsch, D., Perez-Molphe-Montoya, E., Näpflin, N., Gaio, D., Rot, G., Danaila, M., Peluso, M.E., Dmitrijeva, M., Schmidt, T.S.B., von Mering, C. (2026).

https://doi.org/10.1016/j.cell.2026.01.021

Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity

Wiederkehr, F., Paoli, L., Richter, D., et al. (2026).

https://doi.org/10.1038/s41586-026-10159-6

In silico analysis and comparison of the metabolic capabilities of different organisms by reducing metabolic complexity

Vayena, E., Ataman, M., Hatzimanikatis, V. (2026).

https://doi.org/10.1186/s40168-025-02299-0

Cluster dispersal shapes microbial diversity during community assembly

Marrec, L., Lehtinen, S. (2026).

https://doi.org/10.1371/journal.pcbi.1013918

Fecal Microbiota Transplantation Donor Screening: Is Dientamoeba fragilis a Valid Criterion for Donor Exclusion? A Longitudinal Study of a Swiss Cohort

Moser, K., Ballif, A., Pillonel, T., Concu, M., Montenegro-Borbolla, E., Nickel, B., Stampfli, C., Ruf, M.-T., Audry, M., Kapel, N., Gerber, S., Jacot, D., Bertelli, C., Galpérine, T. (2026).

https://doi.org/10.3390/microorganisms14010217

Community conservatism is widespread across microbial phyla and environments

Malfertheiner, L., Tackmann, J., Matias Rodrigues, J.F., von Mering, C. (2026).

https://doi.org/10.1038/s41559-025-02957-4