Dataset index
Title: mOTUs v2 database
Description: Database for the marker gene-based OTU (mOTU) profiler. The mOTUs profiler is a computational tool that estimates relative abundance of known and currently unknown microbial community members using metagenomic shotgun sequencing data.
Year: 2021
Responsible PI: S. Sunagawa (ETHZ)
Research article: Microbial abundance, activity and population genomic profiling with mOTUs2
Title: Soil Community Growth and Diversity Simulations under Low and High Connectivity Conditions (version MATLAB 2016a)
Description: MATLAB community simulations, MATLAB imaging script, and MATLAB dataset
Year: 2021
Responsible PI: J. R. van der Meer (UNIL)
Research article: Environmental Connectivity Controls Diversity in Soil Microbial Communities.”
Title: 16S rRNA amplicon sequencing raw data underlying Dubey et al., 2021
Description: 16S rRNA amplicon sequencing raw data
Year: 2021
Permanent identifier: NCBI Short Read Archive – PRJNA661487
Responsible PI: J. R. van der Meer (UNIL)
Research article: Environmental Connectivity Controls Diversity in Soil Microbial Communities
Title: CellCognize: a neural network pipeline for cell type classification from flow cytometry data
Description: Flow cytometry data; neural network data; 16S sequencing data
Year: 2020
Responsible PI: J. R. van der Meer (UNIL)
Research article: Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data