Publications
Non-canonical start codons confer context-dependent advantages in carbohydrate utilization for commensal E. coli in the murine gut
https://doi.org/10.1038/s41564-024-01775-x
Commensal E. coli limits Salmonella gut invasion during inflammation by producing toxin-bound siderophores in a tonB-dependent manner
https://doi.org/10.1371/journal.pbio.3002616
Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags
https://doi.org/10.1038/s41564-024-01634-9
mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations
https://doi.org/10.1093/bioinformatics/btae078
From microbiome composition to functional engineering, one step at a time
https://doi.org/10.1128/mmbr.00063-23
The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence
https://doi.org/10.1371/journal.pbio.3002253
Differences in carbon metabolic capacity fuel co-existence and plasmid transfer between Salmonella strains in the mouse gut
https://doi.org/10.1016/j.chom.2023.05.029
Mouse models for bacterial enteropathogen infections: insights into the role of colonization resistance
https://doi.org/10.1080/19490976.2023.2172667
Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota
https://doi.org/10.7554/eLife.81212
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