Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags
Daniel, B. B. J., Steiger, Y., Sintsova, A., Field, C. M., Nguyen, B. D., Schubert, C., Cherrak, Y., Sunagawa, S., Hardt, W.-D., Vorholt, J. A. (2024).
mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations
Sintsova, A., Ruscheweyh, H.-J., Field, C. M., Feer, L., Nguyen, B., Daniel, B., Hardt, W.-D., Vorholt, J. A., Sunagawa, S. (2024).
Leaf microbiome dysbiosis triggered by T2SS-dependent enzyme secretion from opportunistic Xanthomonas pathogens
Pfeilmeier, S., Werz, A., Ote, M., Vorholt, J. A., et al. (2024).
Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning
Emmenegger, B., Massoni, J., Pestalozzi, C. M., Bortfeld-Miller, M., Maier, B. A., Vorholt, J. A. (2023).
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence
Gül, E., Hardt, W.-D., et al. (2023).
Metabolic interaction models recapitulate leaf microbiota ecology
Schäfer, M., Pacheco, A., Künzler, R., Bortfeld-Miller, M., Field, C. M., Vayena, E., Hatzimanikatis, V., Vorholt, J. (2023).
Resolving metabolic interaction mechanisms in plant microbiomes
Pacheco, A. R., Vorholt, J. A. (2023).
Mapping phyllosphere microbiota interactions in planta to establish genotype-phenotype relationships
Schäfer, M., Vogel, C.M., Bortfeld-Miller, M., Mittelviefhaus, M., Vorholt, J.A. (2022).
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