Publications

https://www.nature.com/articles/s41477-024-01856-z
Keppler, A., Roulier, M., Pfeilmeier, S., Petti, G. C., Sintsova, A., Vorholt, J., et al. (2024).
https://doi.org/10.1038/s41477-024-01856-z
Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization
Nguyen, B. D., Sintsova, A., Schubert, C., Slack, E., Vorholt, J, Sunagawa, S., Hardt, W.-D., et al. (2024).
https://doi.org/10.1016/j.chom.2024.08.015
Community standards and future opportunities for synthetic communities in plant–microbiota research
Northen, T. R., Geldner, N., Schulze-Lefert, P., Vorholt, J., Garrido-Oter, R., et al. (2024).
https://doi.org/10.1038/s41564-024-01833-4
Fragmented micro-growth habitats present opportunities for alternative competitive outcomes
Batsch, M., Guex, I., Todorov, H., Heiman, C. M., Vacheron, J., Vorholt, J., Keel, C., van der Meer, J. R. (2024).
https://doi.org/10.1038/s41467-024-51944-z
Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags
Daniel, B. B. J., Steiger, Y., Sintsova, A., Field, C. M., Nguyen, B. D., Schubert, C., Cherrak, Y., Sunagawa, S., Hardt, W.-D., Vorholt, J. A. (2024).
https://doi.org/10.1038/s41564-024-01634-9
mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations
Sintsova, A., Ruscheweyh, H.-J., Field, C. M., Feer, L., Nguyen, B., Daniel, B., Hardt, W.-D., Vorholt, J. A., Sunagawa, S. (2024).
https://doi.org/10.1093/bioinformatics/btae078
Leaf microbiome dysbiosis triggered by T2SS-dependent enzyme secretion from opportunistic Xanthomonas pathogens
Pfeilmeier, S., Werz, A., Ote, M., Vorholt, J. A., et al. (2024).
https://doi.org/10.1038/s41564-023-01555-z
Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning
Emmenegger, B., Massoni, J., Pestalozzi, C. M., Bortfeld-Miller, M., Maier, B. A., Vorholt, J. A. (2023).
https://doi.org/10.1038/s41467-023-43793-z
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
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