Sunagawa, S. Archives

Publications

The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence

Gül, E., Hardt, W.-D., et al. (2023).

https://doi.org/10.1371/journal.pbio.3002253

Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota

Hoces, D., Greter, G., Arnoldini, M., Stäubli, M., Moresi, C., Sintsova, A., Slack, E., et al. (2023).

https://doi.org/10.7554/eLife.81212

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

Ruscheweyh, H.-J., Milanese, A., Paoli, L., Karcher, N., Sunagawa, S., et al. (2022).

https://doi.org/10.1186/s40168-022-01410-z

Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle

Hoces, D., Lan, J., Sun, W., Geiser, T., Stäubli, M., Barazzone, E., Arnoldini, M., Challa, T.D., Klug, M., Kellenberger, A., Nowok, S., Faccin, E., Macpherson, A.J., Stecher, B., Sunagawa, S., Zenobi, R., Hardt, W.-D., Wolfrum, C., Slack, E. (2022).

https://doi.org/10.1371/journal.pbio.3001743

mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities

Ruscheweyh, H.-J., Milanese, A., Paoli, L., Sintsova, A., Mende, D. R., Zeller, G., Sunagawa, S. (2021).

https://doi.org/10.1002/cpz1.218

mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes

Salazar, G., Ruscheweyh, H.-J., Hildebrand, F., Acinas, S. G., Sunagawa, S. (2021).

https://doi.org/10.1093/bioinformatics/btab465

The plant NADPH oxidase RBOHD is required for microbiota homeostasis in leaves

Pfeilmeier, S., Petti, G. C., Bortfeld-Miller, Daniel, B., Field, C. M., Sunagawa, S., Vorholt, J. A. (2021).

https://doi.org/10.1038/s41564-021-00929-5

High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains

Zünd, M., Ruscheweyh, H.-J., Field, C. M., Meyer, N., Cuenca, M., Hoces, D., Hardt, W.-D., Sunagawa, S. (2021).