Publications
The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence
https://doi.org/10.1371/journal.pbio.3002253
Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota
https://doi.org/10.7554/eLife.81212
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
https://doi.org/10.1186/s40168-022-01410-z
Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle
https://doi.org/10.1371/journal.pbio.3001743
mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities
https://doi.org/10.1002/cpz1.218
mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes
https://doi.org/10.1093/bioinformatics/btab465
The plant NADPH oxidase RBOHD is required for microbiota homeostasis in leaves
https://doi.org/10.1038/s41564-021-00929-5
High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains
https://doi.org/10.1186/s40168-021-01033-w
Space, time and microdiversity: towards a resolution revolution in microbiomics
doi: 10.1111/1758-2229.12897