The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence
Gül, E., Hardt, W.-D., et al. (2023).
Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota
Hoces, D., Greter, G., Arnoldini, M., Stäubli, M., Moresi, C., Sintsova, A., Slack, E., et al. (2023).
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
Ruscheweyh, H.-J., Milanese, A., Paoli, L., Karcher, N., Sunagawa, S., et al. (2022).
Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle
Hoces, D., Lan, J., Sun, W., Geiser, T., Stäubli, M., Barazzone, E., Arnoldini, M., Challa, T.D., Klug, M., Kellenberger, A., Nowok, S., Faccin, E., Macpherson, A.J., Stecher, B., Sunagawa, S., Zenobi, R., Hardt, W.-D., Wolfrum, C., Slack, E. (2022).
mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities
Ruscheweyh, H.-J., Milanese, A., Paoli, L., Sintsova, A., Mende, D. R., Zeller, G., Sunagawa, S. (2021).
mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes
Salazar, G., Ruscheweyh, H.-J., Hildebrand, F., Acinas, S. G., Sunagawa, S. (2021).
The plant NADPH oxidase RBOHD is required for microbiota homeostasis in leaves
Pfeilmeier, S., Petti, G. C., Bortfeld-Miller, Daniel, B., Field, C. M., Sunagawa, S., Vorholt, J. A. (2021).
High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains
Zünd, M., Ruscheweyh, H.-J., Field, C. M., Meyer, N., Cuenca, M., Hoces, D., Hardt, W.-D., Sunagawa, S. (2021).
Space, time and microdiversity: towards a resolution revolution in microbiomics
Paoli, L., Sunagawa, S. (2020).
doi: 10.1111/1758-2229.12897