Publications

Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions
Causevic, S., Dubey, M., Morales, M., Salazar, G., Sentchilo, V., Carraro, N., Ruscheweyh, H.-J., Sunagawa, S., van der Meer, J. R. (2024).
https://doi.org/10.1038/s41467-024-46933-1
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere
Garrido-Sanz, D., Causevic, S., Vacheron, J., Heiman, C. M., Sentchilo, V., van der Meer J. R., Keel, C. (2023).
https://doi.org/10.1186/s40168-023-01660-5
Regulated bacterial interaction networks: A mathematical framework to describe competitive growth under inclusion of metabolite cross-feeding
Guex, I., Mazza, C., Dubey, M., Batsch, M., Li, R., van der Meer, J. R. (2023).
https://doi.org/10.1371/journal.pcbi.1011402 See th
STrack: A Tool to Simply Track Bacterial Cells in Microscopy Time-Lapse Images
Todorov, H., Miguel Trabajo, T., van der Meer, J. R. (2023).
https://doi.org/10.1128/msphere.00658-22
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2
Morales, M., Sentchilo, V., Carraro, N., Causevic, S., Vuarambon, D., van der Meer, J. R. (2023).
https://doi.org/10.1128/msystems.01174-22
Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation
Causevic, S., Tackmann, J., Sentchilo, V., von Mering, C., van der Meer, J. R. (2022).
https://doi.org/10.1128/msystems.00160-22
Recent advances in microbial community analysis from machine learning of multiparametric flow cytometry data
Özel Duygan, B. D., van der Meer, J. R. (2022).
https://doi.org/10.1016/j.copbio.2022.102688
Environmental connectivity controls diversity in soil microbial communities
Dubey, M., Hadadi, N., Pelet, S., Carraro, N., Johnson, D. R., van der Meer, J. R. (2021).
doi: 10.1038/s42003-021-02023-2
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