Publications

STrack: A Tool to Simply Track Bacterial Cells in Microscopy Time-Lapse Images
Todorov, H., Miguel Trabajo, T., van der Meer, J. R. (2023).
https://doi.org/10.1128/msphere.00658-22
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2
Morales, M., Sentchilo, V., Carraro, N., Causevic, S., Vuarambon, D., van der Meer, J. R. (2023).
https://doi.org/10.1128/msystems.01174-22
Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation
Causevic, S., Tackmann, J., Sentchilo, V., von Mering, C., van der Meer, J. R. (2022).
https://doi.org/10.1128/msystems.00160-22
Recent advances in microbial community analysis from machine learning of multiparametric flow cytometry data
Özel Duygan, B. D., van der Meer, J. R. (2022).
https://doi.org/10.1016/j.copbio.2022.102688
Environmental connectivity controls diversity in soil microbial communities
Dubey, M., Hadadi, N., Pelet, S., Carraro, N., Johnson, D. R., van der Meer, J. R. (2021).
doi: 10.1038/s42003-021-02023-2
Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data
Özel Duygan, B.D., Hadadi, N., Farizah Babu, A., Seyfried, M., van der Meer, J.R. (2020).
doi: 10.1038/s42003-020-1106-y
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