Publications

Inferring bacterial interspecific interactions from microcolony growth expansion
Miguel Trabajo, T., Guex, I., Dubey, M., Sarton-Lohéac, E., Todorov, H., Richard, X., Mazza, C., van der Meer, J. R. (2024).
https://doi.org/10.1093/femsml/uqae020
Fragmented micro-growth habitats present opportunities for alternative competitive outcomes
Batsch, M., Guex, I., Todorov, H., Heiman, C. M., Vacheron, J., Vorholt, J., Keel, C., van der Meer, J. R. (2024).
https://doi.org/10.1038/s41467-024-51944-z
Bacttle: a microbiology educational board game for lay public and schools
Miguel Trabajo, T., Dorcey, E., van der Meer, J. R. (2024).
https://doi.org/10.1128/jmbe.00097-24
Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions
Causevic, S., Dubey, M., Morales, M., Salazar, G., Sentchilo, V., Carraro, N., Ruscheweyh, H.-J., Sunagawa, S., van der Meer, J. R. (2024).
https://doi.org/10.1038/s41467-024-46933-1
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere
Garrido-Sanz, D., Causevic, S., Vacheron, J., Heiman, C. M., Sentchilo, V., van der Meer J. R., Keel, C. (2023).
https://doi.org/10.1186/s40168-023-01660-5
Regulated bacterial interaction networks: A mathematical framework to describe competitive growth under inclusion of metabolite cross-feeding
Guex, I., Mazza, C., Dubey, M., Batsch, M., Li, R., van der Meer, J. R. (2023).
https://doi.org/10.1371/journal.pcbi.1011402 See th
STrack: A Tool to Simply Track Bacterial Cells in Microscopy Time-Lapse Images
Todorov, H., Miguel Trabajo, T., van der Meer, J. R. (2023).
https://doi.org/10.1128/msphere.00658-22
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2
Morales, M., Sentchilo, V., Carraro, N., Causevic, S., Vuarambon, D., van der Meer, J. R. (2023).
https://doi.org/10.1128/msystems.01174-22
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