Publications

In silico typing maps the natural diversity of Escherichia coli transporter-dependent capsules
Miravet-Verde, S., Cacace, E., Mores, C.R. et al. (2026).
https://doi.org/10.1038/s41564-026-02323-5
The ecology of bacterial attachment to phytoplankton
Forget, M., Müller, O. & Stocker, R. (2026).
https://www.nature.com/articles/s41564-026-02287-6
The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems
Matias Rodrigues, J.F., Tackmann, J., Malfertheiner, L., Patsch, D., Perez-Molphe-Montoya, E., Näpflin, N., Gaio, D., Rot, G., Danaila, M., Peluso, M.E., Dmitrijeva, M., Schmidt, T.S.B., von Mering, C. (2026).
https://doi.org/10.1016/j.cell.2026.01.021
Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity
Wiederkehr, F., Paoli, L., Richter, D., et al. (2026).
https://doi.org/10.1038/s41586-026-10159-6
In silico analysis and comparison of the metabolic capabilities of different organisms by reducing metabolic complexity
Vayena, E., Ataman, M., Hatzimanikatis, V. (2026).
https://doi.org/10.1186/s40168-025-02299-0
Cluster dispersal shapes microbial diversity during community assembly
Marrec, L., Lehtinen, S. (2026).
https://doi.org/10.1371/journal.pcbi.1013918
Community conservatism is widespread across microbial phyla and environments
Malfertheiner, L., Tackmann, J., Matias Rodrigues, J.F., von Mering, C. (2026).
https://doi.org/10.1038/s41559-025-02957-4
Novel artificial selection method improves function of simulated microbial communities
Vessman, B., Guridi-Fernández, P., Arias-Sánchez, F.I., Mitri, S. (2026).
https://doi.org/10.1371/journal.pcbi.1013863
LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis
Fido, M., Hoesli, E., Cappio Barazzone, E., Zenobi, R., Slack E. (2025).
https://doi.org/10.1371/journal.pcbi.1013095
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