Publications

Metabolic feedbacks drive population dynamics and can lead to oscillations among leaf bacteria
Pacheco, A.R., Ugolini, G.S., Rüdisser, S.H., Zamuner, A., Bortfeld-Miller, M., Kiefer, P., Oschmann, F., Charlton, S.G.V., Berger, M., Redaelli, T., Salazar, M.A., Dukovski, I., van der Meer, J.R., Schubert, O.T., Ackermann, M., Stocker, R., Vorholt, J.A. (2026).
https://doi.org/10.1038/s41467-026-73686-w
A microbiologist’s field guide to community ecology
Beldi, L., Henderson, A., Lee, M.N.Y., Luneau, J.S., Mazel, F., Miller, T.E., Padmanabha, P., Raach, B., van Vliet, S., Weiss, A.S., Meacock, O.J., Vogel, M.A. (2026).
https://doi.org/10.1093/ismeco/ycag118
Root and microbial contributions to anoxic microsite formation in the rhizosphere: a microfluidic approach
Lacroix, E.M., Ceriotti, G., Garrido-Sanz, D., Borisov, S.M., Berg, J.S., Keel, C., de Anna, P., Keiluweit, M. (2026).
https://doi.org/10.1111/nph.71109
The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems
Matias Rodrigues, J.F., Tackmann, J., Malfertheiner, L., Patsch, D., Perez-Molphe-Montoya, E., Näpflin, N., Gaio, D., Rot, G., Danaila, M., Peluso, M.E., Dmitrijeva, M., Schmidt, T.S.B., von Mering, C. (2026).
https://doi.org/10.1016/j.cell.2026.01.021
Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity
Wiederkehr, F., Paoli, L., Richter, D., et al. (2026).
https://doi.org/10.1038/s41586-026-10159-6
Limits to the evolution of metabolic dependency in spatially structured microbial communities
Ramesh, D., Fara, E., Oschmann, F., Ugolini, G.S., Stocker, R., van Vliet, S., Ackermann, M., Schubert, O.T. (2026).
https://doi.org/10.1016/j.isci.2026.114912
LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis
Fido, M., Hoesli, E., Cappio Barazzone, E., Zenobi, R., Slack E. (2025).
https://doi.org/10.1371/journal.pcbi.1013095
One Health, One Microbiome
Muhummed, A.M., Lanker, K.C., Yersin, S., Zinsstag, J., Vonaesch, P. (2025).
https://doi.org/10.1038/s41467-025-64115-5
Habitat filtering more than microbiota origin controls microbiome transplant outcomes in soil
Causevic, S., Tackmann, J., Sentchilo, V., Malfertheiner, L., Von Mering, C., van der Meer, J. R. (2025).
https://doi.org/10.1093/ismejo/wraf162
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