WP1 - Human Archives

Publications

Strain-level translocation and enrichment dynamics of oral bacteria in the lower gastrointestinal tract of stunted children

Yersin, S., Gody, J. C., Mazel, F., Djimbele, E., Nigateloum, S. N., et al. (2026).

https://doi.org/10.1080/19490976.2026.2653550

Fecal Microbiota Transplantation Donor Screening: Is Dientamoeba fragilis a Valid Criterion for Donor Exclusion? A Longitudinal Study of a Swiss Cohort

Moser, K., Ballif, A., Pillonel, T., Concu, M., Montenegro-Borbolla, E., Nickel, B., Stampfli, C., Ruf, M.-T., Audry, M., Kapel, N., Gerber, S., Jacot, D., Bertelli, C., Galpérine, T. (2026).

https://doi.org/10.3390/microorganisms14010217

LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis

Fido, M., Hoesli, E., Cappio Barazzone, E., Zenobi, R., Slack E. (2025).

https://doi.org/10.1371/journal.pcbi.1013095

Evaluating long-term stool preservation methods for maximizing the recovery of viable human fecal microbiota

Teo, Y., Lavrinienko, A., Albertos Torres, D., Asare, P.T., Ruder, A., Dominguez-Bello, M.G., Egli, A., Bokulich, N.A., Vonaesch, P. (2025).

https://doi.org/10.1080/29933935.2025.2594958

From global to local: rethinking the design of probiotic intervention strategies

Vonaesch, P., Garenau, J., Dominguez-Bello, M.G. (2025).

https://doi.org/10.1016/j.tim.2025.11.009

One Health, One Microbiome

Muhummed, A.M., Lanker, K.C., Yersin, S., Zinsstag, J., Vonaesch, P. (2025).

https://doi.org/10.1038/s41467-025-64115-5

Blood metabolomics improves prediction of central nervous system damage in multiple sclerosis

Rebeaud, J., Phillips, N.E., Thévoz, G., Vigne, S., Nassirnia, S., Gauthier-Jaques, A., Lim-Dubois-Ferriere, P., Panda, S., Théaudin, M., Du Pasquier, R., Greub, G., Bertelli, C., Kuhle, J., Collet, T.-H. (2025).

https://doi.org/10.1007/s11306-025-02315-2

Quantifying the varying harvest of fermentation products from the human gut microbiota

Arnoldini, M., Sharma, R., Moresi, C., Chure, G., Chabbey, J., Slack, E., Cremer, J. (2025).

https://doi.org/10.1016/j.cell.2025.07.005

Microbial and antimicrobial resistance diagnostics by gas sensors and machine learning

Berk, M.B., Shin, H., Jutzeler, C.R., Kessler, T.M., Slack, E., Egli, A., Güntner, A.T. (2025).

https://doi.org/10.1016/j.celbio.2025.100125