Publications

Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data
Özel Duygan, B.D., Hadadi, N., Farizah Babu, A., Seyfried, M., van der Meer, J.R. (2020).
doi: 10.1038/s42003-020-1106-y
Intestinal Epithelial NAIP/NLRC4 Restricts Systemic Dissemination of the Adapted Pathogen Salmonella Typhimurium Due to Site-Specific Bacterial PAMP Expression.
Hausmann, A., Böck, D., Geiser, P., Berthold, D.L., Fattinger, S.A., Furter, M., Bouman, J.A. et al. (2020).
doi: 10.1038/s41385-019-0247-0
Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data.
Tackmann, J., Rodrigues, J.F.M., Mering, C. von (2019).
doi: 10.1016/j.cels.2019.08.002
Tara Oceans: towards global ocean ecosystems biology.
Sunagawa, S., Acinas, S.G., Bork, P., Bowler, C., Eveillard, D., Gorsky, G., Guidi, L., Iudicone, D., Karsenti, E., Lombard, F., Ogata, H., Pesant, S., Sullivan, M.B., Wincker, P., Vargas, C. de (2020).
doi: 10.1038/s41579-020-0364-5
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity.
Maistrenko, O.M., Mende, D.R., Luetge, M., Hildebrand, F., Schmidt, T.S.B., Li, S.S., Rodrigues, J.F.M., von Mering, C., Pedro Coelho, L., Huerta-Cepas, J., Sunagawa, S., Bork, P. (2020).
doi: 10.1038/s41396-020-0600-z
Single-cell bacterial transcription measurements reveal the importance of dimethylsulfoniopropionate (DMSP) hotspots in ocean sulfur cycling.
Gao, C., Fernandez, V.I., Lee, K.S., Fenizia, S., Pohnert, G., Seymour, J.R., Raina, J.-B., Stocker, R. (2020).
doi: 10.1038/s41467-020-15693-z
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