Publications

MeSS and assembly_finder: a toolkit for in silico metagenomic sample generation
Chaabane, F., Pillonel, T., Bertelli, C. (2025).
https://doi.org/10.1093/bioinformatics/btae760
zDB: bacterial comparative genomics made easy
Marquis, B., Pillonel, T., Carrara, A., Bertelli, C. (2024).
https://doi.org/10.1128/msystems.00473-24
Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort
Galperine, T., Choi, Y., Pagani, J.-L., Kritikos, A., Greub, G., Guery, B., Bertelli, C., et al. (2023).
https://doi.org/10.1186/s12879-023-08511-6