Publications

Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits
Yersin, S., Garneau, J. R., Schneeberger, P. H. H., Osman, K. A., Cercamondi, C. I., Muhummed, A. M., Tschopp, R., Zinsstag, J., Vonaesch, P. (2023).
https://doi.org/10.1038/s41598-023-47748-8
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort
Galperine, T., Choi, Y., Pagani, J.-L., Kritikos, A., Greub, G., Guery, B., Bertelli, C., et al. (2023).
https://doi.org/10.1186/s12879-023-08511-6
Dynamics and consequences of nutrition-related microbial dysbiosis in early life: study protocol of the VITERBI GUT project
Tamarelle, J., Creze, M., Savathdy, V., Phonekeo, S., Wallenborn, J., Vonaesch, P., et al. (2023).
https://doi.org/10.3389/fnut.2023.1111478
A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia
Asare, P. T., Lee, C.-H., Hürlimann, V., Teo, Y., Vonaesch, P., et al. (2023).
https://doi.org/10.3389/fmicb.2023.1104707
Detection of SARS-CoV-2 infection clusters: The useful combination of spatiotemporal clustering and genomic analyses
Choi, Y., Ladoy, A., De Ridder, D., Jacot, D., Greub, G., et al. (2022).
doi: 10.3389/fpubh.2022.1016169
Stunted children display ectopic small intestinal colonization by oral bacteria, which cause lipid malabsorption in experimental models
Vonaesch, P., Araujo, J. R., Gody, J.-C., Sansonetti, P. J., The Afribiota Investigators, et al. (2022).
https://doi.org/10.1073/pnas.2209589119
Intestinal microbiota research from a global perspective
Wallenborn, J. T., Vonaesch, P. (2022).
https://doi.org/10.1093/gastro/goac010
Recent advances in microbial community analysis from machine learning of multiparametric flow cytometry data
Özel Duygan, B. D., van der Meer, J. R. (2022).
https://doi.org/10.1016/j.copbio.2022.102688