Publications

Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags
Daniel, B. B. J., Steiger, Y., Sintsova, A., Field, C. M., Nguyen, B. D., Schubert, C., Cherrak, Y., Sunagawa, S., Hardt, W.-D., Vorholt, J. A. (2024).
https://doi.org/10.1038/s41564-024-01634-9
An engineered bacterial symbiont allows noninvasive biosensing of the honey bee gut environment
Chhun, A., Moriano-Gutierrez, S., Zoppi, F., Cabirol, A., Engel, P., Schaerli, Y. (2024).
https://doi.org/10.1371/journal.pbio.3002523
mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations
Sintsova, A., Ruscheweyh, H.-J., Field, C. M., Feer, L., Nguyen, B., Daniel, B., Hardt, W.-D., Vorholt, J. A., Sunagawa, S. (2024).
https://doi.org/10.1093/bioinformatics/btae078
Host-derived organic acids enable gut colonization of the honey bee symbiont Snodgrassella alvi
Quinn, A., El Chazli, Y., Escrig, S., Daraspe, J., Neuschwander, N., McNally, A., Genoud, C., Meibom, A., Engel, P. (2024).
https://doi.org/10.1038/s41564-023-01572-y
Turnover of strain-level diversity modulates functional traits in the honeybee gut microbiome between nurses and foragers
Baud, G. L. C., Prasad, A., Ellegaard, K. M., Engel, P. (2023).
https://doi.org/10.1186/s13059-023-03131-4
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
Neuroactive metabolites modulated by the gut microbiota in honey bees
Cabirol, A., Moriano-Gutierrez, S., Engel, P. (2023).
https://doi.org/10.1111/mmi.15167
“EvoVax” – A rationally designed inactivated Salmonella Typhimurium vaccine induces strong and long-lasting immune responses in pigs
Lentsch, V., Aslani, S., Echtermann, T., Preet, S., Slack., E., et al. (2023).
https://doi.org/10.1016/j.vaccine.2023.07.059
The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence
Gül, E., Hardt, W.-D., et al. (2023).
https://doi.org/10.1371/journal.pbio.3002253
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