WP3 Archives

Publications

Expanding the Pseudomonas diversity of the wheat rhizosphere: four novel species antagonizing fungal phytopathogens and with plant-beneficial properties

Poli, N., Keel, C., Garrido-Sanz, D. (2024).

https://doi.org/10.3389/fmicb.2024.1440341

Natural plant disease suppressiveness in soils extends to insect pest control

Harmsen, N., Vesga, P., Glauser, G., Klötzli, F., Heiman, C. M., Altenried, A., Vacheron, J., Muller, D., Moënne-Loccoz, Y., Steinger, T., Keel C., Garrido-Sanz, D. (2024).

https://doi.org/10.1186/s40168-024-01841-w

Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags

Daniel, B. B. J., Steiger, Y., Sintsova, A., Field, C. M., Nguyen, B. D., Schubert, C., Cherrak, Y., Sunagawa, S., Hardt, W.-D., Vorholt, J. A. (2024).

https://doi.org/10.1038/s41564-024-01634-9

mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations

Sintsova, A., Ruscheweyh, H.-J., Field, C. M., Feer, L., Nguyen, B., Daniel, B., Hardt, W.-D., Vorholt, J. A., Sunagawa, S. (2024).

https://doi.org/10.1093/bioinformatics/btae078

Leaf microbiome dysbiosis triggered by T2SS-dependent enzyme secretion from opportunistic Xanthomonas pathogens

Pfeilmeier, S., Werz, A., Ote, M., Vorholt, J. A., et al. (2024).

https://doi.org/10.1038/s41564-023-01555-z

Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning

Emmenegger, B., Massoni, J., Pestalozzi, C. M., Bortfeld-Miller, M., Maier, B. A., Vorholt, J. A. (2023).

https://doi.org/10.1038/s41467-023-43793-z

From microbiome composition to functional engineering, one step at a time

Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).