Publications

Fecal Microbiota Transplantation Donor Screening: Is Dientamoeba fragilis a Valid Criterion for Donor Exclusion? A Longitudinal Study of a Swiss Cohort
Moser, K., Ballif, A., Pillonel, T., Concu, M., Montenegro-Borbolla, E., Nickel, B., Stampfli, C., Ruf, M.-T., Audry, M., Kapel, N., Gerber, S., Jacot, D., Bertelli, C., Galpérine, T. (2026).
https://doi.org/10.3390/microorganisms14010217
Blood metabolomics improves prediction of central nervous system damage in multiple sclerosis
Rebeaud, J., Phillips, N.E., Thévoz, G., Vigne, S., Nassirnia, S., Gauthier-Jaques, A., Lim-Dubois-Ferriere, P., Panda, S., Théaudin, M., Du Pasquier, R., Greub, G., Bertelli, C., Kuhle, J., Collet, T.-H. (2025).
https://doi.org/10.1007/s11306-025-02315-2
MeSS and assembly_finder: a toolkit for in silico metagenomic sample generation
Chaabane, F., Pillonel, T., Bertelli, C. (2025).
https://doi.org/10.1093/bioinformatics/btae760
zDB: bacterial comparative genomics made easy
Marquis, B., Pillonel, T., Carrara, A., Bertelli, C. (2024).
https://doi.org/10.1128/msystems.00473-24
Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort
Galperine, T., Choi, Y., Pagani, J.-L., Kritikos, A., Greub, G., Guery, B., Bertelli, C., et al. (2023).
https://doi.org/10.1186/s12879-023-08511-6
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