WP4 - Synthetic Microbiomes Archives

Publications

Cross-feeding enables robust coexistence between four bacterial species

Sulheim, S., Teixeira, M., Ulrich, E.,Gillon, A., Testa, S.E.A., Padmanabha, P., Machado, D., and Mitri, S. (2026).

https://doi.org/10.1073/pnas.2607664123

An ecological perspective on functional redundancy and robustness in microbial communities

Weiss, A.S., Lee, M.N.Y., Schubert, O.T., Ackermann, M. (2026).

https://doi.org/10.1016/j.mib.2026.102827

Metabolic feedbacks drive population dynamics and can lead to oscillations among leaf bacteria

Pacheco, A.R., Ugolini, G.S., Rüdisser, S.H., Zamuner, A., Bortfeld-Miller, M., Kiefer, P., Oschmann, F., Charlton, S.G.V., Berger, M., Redaelli, T., Salazar, M.A., Dukovski, I., van der Meer, J.R., Schubert, O.T., Ackermann, M., Stocker, R., Vorholt, J.A. (2026).

https://doi.org/10.1038/s41467-026-73686-w

LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis

Fido, M., Hoesli, E., Cappio Barazzone, E., Zenobi, R., Slack E. (2025).

https://doi.org/10.1371/journal.pcbi.1013095

Deciphering microbial spatial organization: insights from synthetic and engineered communities

Pignon, E., Schaerli, Y. (2025).

https://doi.org/10.1093/ismejo/wraf122

Uptake and leakage rates differentially shape community arrangement and composition of microbial consortia

Pignon, E. , Holló, G. , Steiner, T. , van Vliet, S., Schaerli, Y. (2025).

https://doi.org/10.1093/ismejo/wraf122

Sublethal systemic LPS in mice enables gut-luminal pathogens to bloom through oxygen species-mediated microbiota inhibition

Kroon, S., Malcic, D., Weidert, L., Sunagawa, S., Vorholt, J. A., Maier, L., Lacroix, C., Hausmann, A., Hardt, W.-D., et al. (2025).