Publications

Emergent spatial structure in the gut microbiota is driven by bacterial growth and gut contractions
Greter G., Hummel S., Künzli D., Dünki N., Ruoho N., Burkhardt P., et al. (2026).
https://doi.org/10.1371/journal.pbio.3003772
Mechanisms conferring multi-layered protection against intestinal Salmonella Typhimurium infection
Kroon, S., Hardt, W.-D. (2025).
https://doi.org/10.1093/femsre/fuaf038
Strain-specific galactose utilization by commensal E. coli mitigates Salmonella establishment in the gut
Schubert, C., Näf, J., Petukhov, L., Laganenka, L., Cherrak, Y., Hardt, W.-D. (2025).
https://doi.org/10.1371/journal.ppat.1013232
Vaccine-enhanced competition permits rational bacterial strain replacement in the gut
Lentsch, V., Woller, A., Rocker, A., Hardt, W.-D., Loverdo, C., Diard, M., Slack, E., et al. (2025).

DOI: 10.1126/science.adp5011

Open access version: https://europepmc.org/article/PMC/PMC7617753
Sublethal systemic LPS in mice enables gut-luminal pathogens to bloom through oxygen species-mediated microbiota inhibition
Kroon, S., Malcic, D., Weidert, L., Sunagawa, S., Vorholt, J. A., Maier, L., Lacroix, C., Hausmann, A., Hardt, W.-D., et al. (2025).
https://doi.org/10.1038/s41467-025-57979-0
Metabolic network reconstruction as a resource for analyzing Salmonella Typhimurium SL1344 growth in the mouse intestine
Vayena, E., Fuchs, L., Mohammadi Peyani, H., Lagoda, K., Nguyen, B., Hardt, W.-D., Hatzimanikatis, V. (2025).
https://doi.org/10.1371/journal.pcbi.1012869
Neutrophil recruitment during intestinal inflammation primes Salmonella elimination by commensal E. coli in a context-dependent manner
Cherrak, Y., Abi Younes, A., Perez-Molphe-Montoya, E., Vorholt, J. A., Von Mering, C., Hardt, W.-D., et al. (2025).
https://doi.org/10.1016/j.chom.2025.02.004
Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization
Nguyen, B. D., Sintsova, A., Schubert, C., Slack, E., Vorholt, J, Sunagawa, S., Hardt, W.-D., et al. (2024).
https://doi.org/10.1016/j.chom.2024.08.015
Non-canonical start codons confer context-dependent advantages in carbohydrate utilization for commensal E. coli in the murine gut
Cherrak, Y., Salazar, M. A., Näpflin, N., Malfertheiner, L., Herzog, M., Schubert, C., Von Mering., C., Hardt, W.-D. (2024).
https://doi.org/10.1038/s41564-024-01775-x
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