Publications

Quantifying the varying harvest of fermentation products from the human gut microbiota
Arnoldini, M., Sharma, R., Moresi, C., Chure, G., Chabbey, Slack, E., Cremer, J. (2025).
https://doi.org/10.1016/j.cell.2025.07.005
Vaccine-enhanced competition permits rational bacterial strain replacement in the gut
Lentsch, V., Woller, A., Rocker, A., Hardt, W.-D., Loverdo, C., Diard, M., Slack, E., et al. (2025).

DOI: 10.1126/science.adp5011

Open access version: https://europepmc.org/article/PMC/PMC7617753
Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization
Nguyen, B. D., Sintsova, A., Schubert, C., Slack, E., Vorholt, J, Sunagawa, S., Hardt, W.-D., et al. (2024).
https://doi.org/10.1016/j.chom.2024.08.015
Host control of the microbiome: Mechanisms, evolution, and disease
Wilde, J., Slack, E., Foster, K. R. (2024).
https://doi.org/10.3929/ethz-b-000685087
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
“EvoVax” – A rationally designed inactivated Salmonella Typhimurium vaccine induces strong and long-lasting immune responses in pigs
Lentsch, V., Aslani, S., Echtermann, T., Preet, S., Slack., E., et al. (2023).
https://doi.org/10.1016/j.vaccine.2023.07.059
The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence
Gül, E., Hardt, W.-D., et al. (2023).
https://doi.org/10.1371/journal.pbio.3002253
Non-invasive monitoring of microbiota and host metabolism using secondary electrospray ionization-mass spectrometry
Lan, J., Greter, G., Streckenbach, B., Wanner, B., Arnoldini, M., Zenobi, R., Slack, E. (2023).
https://doi.org/10.1016/j.crmeth.2023.100539
Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota
Hoces, D., Greter, G., Arnoldini, M., Stäubli, M., Moresi, C., Sintsova, A., Slack, E., et al. (2023).
https://doi.org/10.7554/eLife.81212
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