Publications

In silico typing maps the natural diversity of Escherichia coli transporter-dependent capsules
Miravet-Verde, S., Cacace, E., Mores, C.R. et al. (2026).
https://doi.org/10.1038/s41564-026-02323-5
Emergent spatial structure in the gut microbiota is driven by bacterial growth and gut contractions
Greter G., Hummel S., Künzli D., Dünki N., Ruoho N., Burkhardt P., et al. (2026).
https://doi.org/10.1371/journal.pbio.3003772
LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis
Fido, M., Hoesli, E., Cappio Barazzone, E., Zenobi, R., Slack E. (2025).
https://doi.org/10.1371/journal.pcbi.1013095
Quantifying the varying harvest of fermentation products from the human gut microbiota
Arnoldini, M., Sharma, R., Moresi, C., Chure, G., Chabbey, J., Slack, E., Cremer, J. (2025).
https://doi.org/10.1016/j.cell.2025.07.005
Microbial and antimicrobial resistance diagnostics by gas sensors and machine learning
Berk, M.B., Shin, H., Jutzeler, C.R., Kessler, T.M., Slack, E., Egli, A., Güntner, A.T. (2025).
https://doi.org/10.1016/j.celbio.2025.100125
Vaccine-enhanced competition permits rational bacterial strain replacement in the gut
Lentsch, V., Woller, A., Rocker, A., Hardt, W.-D., Loverdo, C., Diard, M., Slack, E., et al. (2025).

DOI: 10.1126/science.adp5011

Open access version: https://europepmc.org/article/PMC/PMC7617753
Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization
Nguyen, B. D., Sintsova, A., Schubert, C., Slack, E., Vorholt, J, Sunagawa, S., Hardt, W.-D., et al. (2024).
https://doi.org/10.1016/j.chom.2024.08.015
Host control of the microbiome: Mechanisms, evolution, and disease
Wilde, J., Slack, E., Foster, K. R. (2024).
https://doi.org/10.3929/ethz-b-000685087
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
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