Publications

Quantifying the varying harvest of fermentation products from the human gut microbiota
Arnoldini, M., Sharma, R., Moresi, C., Chure, G., Chabbey, J., Slack, E., Cremer, J. (2025).
https://doi.org/10.1016/j.cell.2025.07.005
Microbial and antimicrobial resistance diagnostics by gas sensors and machine learning
Berk, M.B., Shin, H., Jutzeler, C.R., Kessler, T.M., Slack, E., Egli, A., Güntner, A.T. (2025).
https://doi.org/10.1016/j.celbio.2025.100125
Vaccine-enhanced competition permits rational bacterial strain replacement in the gut
Lentsch, V., Woller, A., Rocker, A., Hardt, W.-D., Loverdo, C., Diard, M., Slack, E., et al. (2025).

DOI: 10.1126/science.adp5011

Open access version: https://europepmc.org/article/PMC/PMC7617753
Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization
Nguyen, B. D., Sintsova, A., Schubert, C., Slack, E., Vorholt, J, Sunagawa, S., Hardt, W.-D., et al. (2024).
https://doi.org/10.1016/j.chom.2024.08.015
Host control of the microbiome: Mechanisms, evolution, and disease
Wilde, J., Slack, E., Foster, K. R. (2024).
https://doi.org/10.3929/ethz-b-000685087
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
“EvoVax” – A rationally designed inactivated Salmonella Typhimurium vaccine induces strong and long-lasting immune responses in pigs
Lentsch, V., Aslani, S., Echtermann, T., Preet, S., Slack., E., et al. (2023).
https://doi.org/10.1016/j.vaccine.2023.07.059
The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence
Gül, E., Hardt, W.-D., et al. (2023).
https://doi.org/10.1371/journal.pbio.3002253
Non-invasive monitoring of microbiota and host metabolism using secondary electrospray ionization-mass spectrometry
Lan, J., Greter, G., Streckenbach, B., Wanner, B., Arnoldini, M., Zenobi, R., Slack, E. (2023).
https://doi.org/10.1016/j.crmeth.2023.100539
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