Publications

Blood metabolomics improves prediction of central nervous system damage in multiple sclerosis
Rebeaud, J., Phillips, N.E., Thévoz, G., Vigne, S., Nassirnia, S., Gauthier-Jaques, A., Lim-Dubois-Ferriere, P., Panda, S., Théaudin, M., Du Pasquier, R., Greub, G., Bertelli, C., Kuhle, J., Collet, T.-H. (2025).
https://doi.org/10.1007/s11306-025-02315-2
Quantifying the varying harvest of fermentation products from the human gut microbiota
Arnoldini, M., Sharma, R., Moresi, C., Chure, G., Chabbey, J., Slack, E., Cremer, J. (2025).
https://doi.org/10.1016/j.cell.2025.07.005
Microbial and antimicrobial resistance diagnostics by gas sensors and machine learning
Berk, M.B., Shin, H., Jutzeler, C.R., Kessler, T.M., Slack, E., Egli, A., Güntner, A.T. (2025).
https://doi.org/10.1016/j.celbio.2025.100125
zDB: bacterial comparative genomics made easy
Marquis, B., Pillonel, T., Carrara, A., Bertelli, C. (2024).
https://doi.org/10.1128/msystems.00473-24
Environmental and geographical factors influencing the spread of SARS-CoV-2 over 2 years: a fine-scale spatiotemporal analysis
De Ridder, D., Ladoy, A., Choi, Y., Jacot, D., Vuilleumier, S., Guessous, I., Joost, S., Greub, G. (2024).
https://doi.org/10.3389/fpubh.2024.1298177
Ectopic colonization by oral bacteria as an emerging theme in health and disease
Hernandez-Cabanyero, C., Vonaesch, P. (2024).
https://doi.org/10.1093/femsre/fuae012
Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits
Yersin, S., Garneau, J. R., Schneeberger, P. H. H., Osman, K. A., Cercamondi, C. I., Muhummed, A. M., Tschopp, R., Zinsstag, J., Vonaesch, P. (2023).
https://doi.org/10.1038/s41598-023-47748-8
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort
Galperine, T., Choi, Y., Pagani, J.-L., Kritikos, A., Greub, G., Guery, B., Bertelli, C., et al. (2023).
https://doi.org/10.1186/s12879-023-08511-6
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