WP1 - Human Archives

Publications

Fecal Microbiota Transplantation Donor Screening: Is Dientamoeba fragilis a Valid Criterion for Donor Exclusion? A Longitudinal Study of a Swiss Cohort

Moser, K., Ballif, A., Pillonel, T., Concu, M., Montenegro-Borbolla, E., Nickel, B., Stampfli, C., Ruf, M.-T., Audry, M., Kapel, N., Gerber, S., Jacot, D., Bertelli, C., Galpérine, T. (2026).

https://doi.org/10.3390/microorganisms14010217

LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis

Fido, M., Hoesli, E., Cappio Barazzone, E., Zenobi, R., Slack E. (2025).

https://doi.org/10.1371/journal.pcbi.1013095

Evaluating long-term stool preservation methods for maximizing the recovery of viable human fecal microbiota

Teo, Y., Lavrinienko, A., Albertos Torres, D., Asare, P.T., Ruder, A., Dominguez-Bello, M.G., Egli, A., Bokulich, N.A., Vonaesch, P. (2025).

https://doi.org/10.1080/29933935.2025.2594958

From global to local: rethinking the design of probiotic intervention strategies

Vonaesch, P., Garenau, J., Dominguez-Bello, M.G. (2025).

https://doi.org/10.1016/j.tim.2025.11.009

One Health, One Microbiome

Muhummed, A.M., Lanker, K.C., Yersin, S., Zinsstag, J., Vonaesch, P. (2025).

https://doi.org/10.1038/s41467-025-64115-5

Blood metabolomics improves prediction of central nervous system damage in multiple sclerosis

Rebeaud, J., Phillips, N.E., Thévoz, G., Vigne, S., Nassirnia, S., Gauthier-Jaques, A., Lim-Dubois-Ferriere, P., Panda, S., Théaudin, M., Du Pasquier, R., Greub, G., Bertelli, C., Kuhle, J., Collet, T.-H. (2025).

https://doi.org/10.1007/s11306-025-02315-2

Quantifying the varying harvest of fermentation products from the human gut microbiota

Arnoldini, M., Sharma, R., Moresi, C., Chure, G., Chabbey, J., Slack, E., Cremer, J. (2025).

https://doi.org/10.1016/j.cell.2025.07.005

Microbial and antimicrobial resistance diagnostics by gas sensors and machine learning

Berk, M.B., Shin, H., Jutzeler, C.R., Kessler, T.M., Slack, E., Egli, A., Güntner, A.T. (2025).

https://doi.org/10.1016/j.celbio.2025.100125

zDB: bacterial comparative genomics made easy

Marquis, B., Pillonel, T., Carrara, A., Bertelli, C. (2024).

https://doi.org/10.1128/msystems.00473-24