Publications

Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle
Hoces, D., Lan, J., Sun, W., Geiser, T., Stäubli, M., Barazzone, E., Arnoldini, M., Challa, T.D., Klug, M., Kellenberger, A., Nowok, S., Faccin, E., Macpherson, A.J., Stecher, B., Sunagawa, S., Zenobi, R., Hardt, W.-D., Wolfrum, C., Slack, E. (2022).
https://doi.org/10.1371/journal.pbio.3001743
The gut microbiota affects the social network of honeybees
Liberti, J., Kay, T., Quinn, A., Kesner, L., Frank, E.T., Cabirol, A., Richardson, T.O., Engel, P., Keller, L. (2022).
https://doi.org/10.1038/s41559-022-01840-w
Mild chronic exposure to pesticides alters physiological markers of honey bee health without perturbing the core gut microbiota
Almasri, H., Liberti, J., Brunet, J.-L., Engel, P., Belzunces, L. P. (2022).
https://doi.org/10.1038/s41598-022-08009-2
Functional strain redundancy and persistent phage infection in Swiss hard cheese starter cultures
Somerville, V., Berthoud, H., Schmidt, R. S., Bachmann, H.-P., Meng, Y. H., Fuchsmann, P., von Ah, U., Engel, P. (2021).
https://doi.org/10.1038/s41396-021-01071-0
Microbiota-derived metabolites inhibit Salmonella virulent subpopulation development by acting on single-cell behaviors
Hockenberry, A. M., Micali, G., Takàcs, G., Weng, J., Hardt, W.-D., Ackermann, M. (2021).
https://doi.org/10.1073/pnas.2103027118
Niche partitioning facilitates coexistence of closely related honey bee gut bacteria
Brochet, S., Quinn, A., Mars, R. A. T., Neuschwander, N., Sauer, U., Engel, P. (2021).
doi: 10.7554/eLife.68583
A rationally designed oral vaccine induces immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants
Diard, M., Bakkeren, E., [...], Hardt, W.-D., Slack, E. (2021).
https://doi.org/10.1038/s41564-021-00911-1
High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains
Zünd, M., Ruscheweyh, H.-J., Field, C. M., Meyer, N., Cuenca, M., Hoces, D., Hardt, W.-D., Sunagawa, S. (2021).
https://doi.org/10.1186/s40168-021-01033-w
Elucidating host–microbe interactions in vivo by studying population dynamics using neutral genetic tags
Hausmann, A., Hardt, W.-D. (2020).
doi: 10.1111/imm.13266
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