Publications

Habitat filtering more than microbiota origin controls microbiome transplant outcomes in soil
Causevic, S., Tackmann, J., Sentchilo, V., Malfertheiner, L., Von Mering, C., van der Meer, J. R. (2025).
https://doi.org/10.1093/ismejo/wraf162
High-throughput cultivation and isolation of environmental anaerobes using selectively permeable hydrogel capsules
Sallet, H., Calvo, M., Titus, M., Jacquemin, N., Lederballe Meibom, K., Bernier-Latmani, R. (2025).
https://doi.org/10.1093/ismeco/ycaf117
Seed-borne bacteria drive wheat rhizosphere microbiome assembly via niche partitioning and facilitation
Garrido-Sanz, D., Keel, C. (2025).
https://doi.org/10.1038/s41564-025-01973-1
Disentangling the feedback loops driving spatial patterning in microbial communities
Henderson, A., Del Panta, A., Schubert, O. T., Mitri, S., van Vliet, S. (2025).
doi.org/10.1038/s41522-025-00666-1
Environment-Organism Feedbacks Drive Changes in Ecological Interactions
Meacock, O. J., Mitri, S. (2025).
https://doi.org/10.1111/ele.70027
Soil microbiome interventions for carbon sequestration and climate mitigation
Beattie, G. A., Edlund, A., van der Meer, J. R., et al. (2024).
https://doi.org/10.1128/msystems.01129-24
Plant microbiota feedbacks through dose-responsive expression of general non-self response genes
Keppler, A., Roulier, M., Pfeilmeier, S., Petti, G. C., Sintsova, A., Vorholt, J., et al. (2024).
https://doi.org/10.1038/s41477-024-01856-z
Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization
Nguyen, B. D., Sintsova, A., Schubert, C., Slack, E., Vorholt, J, Sunagawa, S., Hardt, W.-D., et al. (2024).
https://doi.org/10.1016/j.chom.2024.08.015
Community standards and future opportunities for synthetic communities in plant–microbiota research
Northen, T. R., Geldner, N., Schulze-Lefert, P., Vorholt, J., Garrido-Oter, R., et al. (2024).
https://doi.org/10.1038/s41564-024-01833-4
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