WP3 - Plant, Soil, and Environment Archives - Page 3 of 6

Publications

Expanding the Pseudomonas diversity of the wheat rhizosphere: four novel species antagonizing fungal phytopathogens and with plant-beneficial properties

Poli, N., Keel, C., Garrido-Sanz, D. (2024).

https://doi.org/10.3389/fmicb.2024.1440341

Natural plant disease suppressiveness in soils extends to insect pest control

Harmsen, N., Vesga, P., Glauser, G., Klötzli, F., Heiman, C. M., Altenried, A., Vacheron, J., Muller, D., Moënne-Loccoz, Y., Steinger, T., Keel C., Garrido-Sanz, D. (2024).

https://doi.org/10.1186/s40168-024-01841-w

Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions

Causevic, S., Dubey, M., Morales, M., Salazar, G., Sentchilo, V., Carraro, N., Ruscheweyh, H.-J., Sunagawa, S., van der Meer, J. R. (2024).

https://doi.org/10.1038/s41467-024-46933-1

Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags

Daniel, B. B. J., Steiger, Y., Sintsova, A., Field, C. M., Nguyen, B. D., Schubert, C., Cherrak, Y., Sunagawa, S., Hardt, W.-D., Vorholt, J. A. (2024).

https://doi.org/10.1038/s41564-024-01634-9

mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations

Sintsova, A., Ruscheweyh, H.-J., Field, C. M., Feer, L., Nguyen, B., Daniel, B., Hardt, W.-D., Vorholt, J. A., Sunagawa, S. (2024).

https://doi.org/10.1093/bioinformatics/btae078

Leaf microbiome dysbiosis triggered by T2SS-dependent enzyme secretion from opportunistic Xanthomonas pathogens

Pfeilmeier, S., Werz, A., Ote, M., Vorholt, J. A., et al. (2024).

https://doi.org/10.1038/s41564-023-01555-z

Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning

Emmenegger, B., Massoni, J., Pestalozzi, C. M., Bortfeld-Miller, M., Maier, B. A., Vorholt, J. A. (2023).

https://doi.org/10.1038/s41467-023-43793-z

From microbiome composition to functional engineering, one step at a time

Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).