Publications

Community conservatism is widespread across microbial phyla and environments

Malfertheiner, L., Tackmann, J., Matias Rodrigues, J.F., von Mering, C. (2026).

https://doi.org/10.1038/s41559-025-02957-4

Novel artificial selection method improves function of simulated microbial communities

Vessman, B., Guridi-Fernández, P., Arias-Sánchez, F.I., Mitri, S. (2026).

https://doi.org/10.1371/journal.pcbi.1013863

LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis

Fido, M., Hoesli, E., Cappio Barazzone, E., Zenobi, R., Slack E. (2025).

https://doi.org/10.1371/journal.pcbi.1013095

Habitat filtering more than microbiota origin controls microbiome transplant outcomes in soil

Causevic, S., Tackmann, J., Sentchilo, V., Malfertheiner, L., Von Mering, C., van der Meer, J. R. (2025).

https://doi.org/10.1093/ismejo/wraf162

Designing pathways for bioproducing complex chemicals by combining tools for pathway extraction and ranking

Sveshnikova, A., Oftadeh, O. & Hatzimanikatis, V. (2025).

https://doi.org/10.1038/s41467-025-59827-7

Non-canonical start codons confer context-dependent advantages in carbohydrate utilization for commensal E. coli in the murine gut

Cherrak, Y., Salazar, M. A., Näpflin, N., Malfertheiner, L., Herzog, M., Schubert, C., Von Mering., C., Hardt, W.-D. (2024).

https://doi.org/10.1038/s41564-024-01775-x

zDB: bacterial comparative genomics made easy

Marquis, B., Pillonel, T., Carrara, A., Bertelli, C. (2024).

https://doi.org/10.1128/msystems.00473-24

Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions

Causevic, S., Dubey, M., Morales, M., Salazar, G., Sentchilo, V., Carraro, N., Ruscheweyh, H.-J., Sunagawa, S., van der Meer, J. R. (2024).

https://doi.org/10.1038/s41467-024-46933-1

Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags

Daniel, B. B. J., Steiger, Y., Sintsova, A., Field, C. M., Nguyen, B. D., Schubert, C., Cherrak, Y., Sunagawa, S., Hardt, W.-D., Vorholt, J. A. (2024).

https://doi.org/10.1038/s41564-024-01634-9

Load more