Publications

The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems
Matias Rodrigues, J.F., Tackmann, J., Malfertheiner, L., Patsch, D., Perez-Molphe-Montoya, E., Näpflin, N., Gaio, D., Rot, G., Danaila, M., Peluso, M.E., Dmitrijeva, M., Schmidt, T.S.B., von Mering, C. (2026).
https://doi.org/10.1016/j.cell.2026.01.021
Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity
Wiederkehr, F., Paoli, L., Richter, D., et al. (2026).
https://doi.org/10.1038/s41586-026-10159-6
In silico analysis and comparison of the metabolic capabilities of different organisms by reducing metabolic complexity
Vayena, E., Ataman, M., Hatzimanikatis, V. (2026).
https://doi.org/10.1186/s40168-025-02299-0
Cluster dispersal shapes microbial diversity during community assembly
Marrec, L., Lehtinen, S. (2026).
https://doi.org/10.1371/journal.pcbi.1013918
Community conservatism is widespread across microbial phyla and environments
Malfertheiner, L., Tackmann, J., Matias Rodrigues, J.F., von Mering, C. (2026).
https://doi.org/10.1038/s41559-025-02957-4
Novel artificial selection method improves function of simulated microbial communities
Vessman, B., Guridi-Fernández, P., Arias-Sánchez, F.I., Mitri, S. (2026).
https://doi.org/10.1371/journal.pcbi.1013863
LCMSpector: A simple open-source viewer for targeted hyphenated mass spectrometry analysis
Fido, M., Hoesli, E., Cappio Barazzone, E., Zenobi, R., Slack E. (2025).
https://doi.org/10.1371/journal.pcbi.1013095
Habitat filtering more than microbiota origin controls microbiome transplant outcomes in soil
Causevic, S., Tackmann, J., Sentchilo, V., Malfertheiner, L., Von Mering, C., van der Meer, J. R. (2025).
https://doi.org/10.1093/ismejo/wraf162
Designing pathways for bioproducing complex chemicals by combining tools for pathway extraction and ranking
Sveshnikova, A., Oftadeh, O. & Hatzimanikatis, V. (2025).
https://doi.org/10.1038/s41467-025-59827-7
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