Publications

mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations
Sintsova, A., Ruscheweyh, H.-J., Field, C. M., Feer, L., Nguyen, B., Daniel, B., Hardt, W.-D., Vorholt, J. A., Sunagawa, S. (2024).
https://doi.org/10.1093/bioinformatics/btae078
From microbiome composition to functional engineering, one step at a time
Burz, S. D., Causevic, S., Dal Co, A., Dmitrijeva, M., Vonaesch, P., Vorholt, J., et al. (2023).
https://doi.org/10.1128/mmbr.00063-23
The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence
Gül, E., Hardt, W.-D., et al. (2023).
https://doi.org/10.1371/journal.pbio.3002253
Metabolic interaction models recapitulate leaf microbiota ecology
Schäfer, M., Pacheco, A., Künzler, R., Bortfeld-Miller, M., Field, C. M., Vayena, E., Hatzimanikatis, V., Vorholt, J. (2023).
https://doi.org/10.3929/ethz-b-000621167
Controlled motility in the cyanobacterium Trichodesmium regulates aggregate architecture
Pfreundt, U., Slomka, J., Schneider, G., Sengupta, A., Carrara, F., Fernandez, V., Ackermann, M., Stocker R. (2023).
DOI: 10.1126/science.adf2753
Optimal enzyme utilization suggests that concentrations and thermodynamics determine binding mechanisms and enzyme saturations
Sahin, A., Weilandt, D. R., Hatzimanikatis, V. (2023).
https://doi.org/10.1038/s41467-023-38159-4
A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia
Asare, P. T., Lee, C.-H., Hürlimann, V., Teo, Y., Vonaesch, P., et al. (2023).
https://doi.org/10.3389/fmicb.2023.1104707
Spatial self-organization of metabolism in microbial systems: A matter of enzymes and chemicals
Dal Co, A., Ackermann, M., van Vliet, S. (2023).
https://doi.org/10.1016/j.cels.2022.12.009
Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota
Hoces, D., Greter, G., Arnoldini, M., Stäubli, M., Moresi, C., Sintsova, A., Slack, E., et al. (2023).
https://doi.org/10.7554/eLife.81212
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