WP6 Archives - Page 3 of 4

Publications

A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactions

Vayena, E., Chiappino-Pepe, A., MohammadiPeyhani, H., Francioli, Y., Hatzimanikatis, V., et al. (2022).

https://doi.org/10.1073/pnas.2211197119

Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle

Hoces, D., Lan, J., Sun, W., Geiser, T., Stäubli, M., Barazzone, E., Arnoldini, M., Challa, T.D., Klug, M., Kellenberger, A., Nowok, S., Faccin, E., Macpherson, A.J., Stecher, B., Sunagawa, S., Zenobi, R., Hardt, W.-D., Wolfrum, C., Slack, E. (2022).

https://doi.org/10.1371/journal.pbio.3001743

Computational tools and resources for designing new pathways to small molecules

Sveshnikova, A., Mohammadi Peyhani, H., Hatzimanikatis, V. (2022).

https://doi.org/10.1016/j.copbio.2022.102722

ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds

Sveshnikova, A., Mohammadi Peyhani, H., Hatzimanikatis, V. (2022).

https://doi.org/10.1016/j.ymben.2022.03.013

Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation

Causevic, S., Tackmann, J., Sentchilo, V., von Mering, C., van der Meer, J. R. (2022).

https://doi.org/10.1128/msystems.00160-22

Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASx

Mohammadi Peyhani, H., Hafner, J., Svshenikova, A., Viterbo, V., Hatzimanikatis, V. (2022).