Publications

Sublethal systemic LPS in mice enables gut-luminal pathogens to bloom through oxygen species-mediated microbiota inhibition
Kroon, S., Malcic, D., Weidert, L., Sunagawa, S., Vorholt, J. A., Maier, L., Lacroix, C., Hausmann, A., Hardt, W.-D., et al. (2025).
https://doi.org/10.1038/s41467-025-57979-0
Metabolic network reconstruction as a resource for analyzing Salmonella Typhimurium SL1344 growth in the mouse intestine
Vayena, E., Fuchs, L., Mohammadi Peyani, H., Lagoda, K., Nguyen, B., Hardt, W.-D., Hatzimanikatis, V. (2025).
https://doi.org/10.1371/journal.pcbi.1012869
Neutrophil recruitment during intestinal inflammation primes Salmonella elimination by commensal E. coli in a context-dependent manner
Cherrak, Y., Abi Younes, A., Perez-Molphe-Montoya, E., Vorholt, J. A., Von Mering, C., Hardt, W.-D., et al. (2025).
https://doi.org/10.1016/j.chom.2025.02.004
MeSS and assembly_finder: a toolkit for in silico metagenomic sample generation
Chaabane, F., Pillonel, T., Bertelli, C. (2025).
https://doi.org/10.1093/bioinformatics/btae760
Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization
Nguyen, B. D., Sintsova, A., Schubert, C., Slack, E., Vorholt, J, Sunagawa, S., Hardt, W.-D., et al. (2024).
https://doi.org/10.1016/j.chom.2024.08.015
Pseudomonas aeruginosa faces a fitness trade-off between mucosal colonization and antibiotic tolerance during airway infection
Meirelles, L. A., Vayena, E., Hatzimanikatis, V., Persat, A., et al. (2024).
https://doi.org/10.1038/s41564-024-01842-3
Fecal transplant allows transmission of the gut microbiota in honey bees
Cabirol, A., Chhun, A., Liberti, J., Kesner, L., Neuschwander, N., Schaerli, Y., Engel, P. (2024).
https://doi.org/10.1128/msphere.00262-24
Bacttle: a microbiology educational board game for lay public and schools
Miguel Trabajo, T., Dorcey, E., van der Meer, J. R. (2024).
https://doi.org/10.1128/jmbe.00097-24
An engineered bacterial symbiont allows noninvasive biosensing of the honey bee gut environment
Chhun, A., Moriano-Gutierrez, S., Zoppi, F., Cabirol, A., Engel, P., Schaerli, Y. (2024).
https://doi.org/10.1371/journal.pbio.3002523
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